GSTP
Faculty Name /
Primary Department |
Research Interests |
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Ansari,
Aseem
Biochemistry |
Studying
the regulation of gene expression at the
interface of chemistry biology and genomics,
dissecting genome-wide transcriptional cascades. |
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Asimakopoulous, Fotis
Medicine |
Genomic approaches to characterize multiple myeloma |
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Attie,
Alan
Biochemistry |
Molecular
genetics of diabetes & insulin resistance;
cell biology of lipoprotein assembly and
cholesterol trafficking. |
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Beebe,
David
Biomedical Engineering |
Design,
fabrication, and testing of novel micro
fabrication techniques; microdevices and
microsystems designed to facilitate advances
in biology. |
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Bresnick, Emery
Cell & Regenerative Biology |
Multidisciplinary approaches to understand stem/progenitor cell function, blood cell development, and vascular biology. |
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Burkard,
Mark
Medicine; Hematology-Oncology |
Identification
of genetic alterations in cancer cells;
cancer genomics; targeted treatment strategies
for breast cancer. |
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Broman,
Karl
Biostatistics
and Medical Informatics |
Statistical problems in genetics, genomics
and molecular biology. Development of improved
methods for detecting and identifying genes
contributing to variation in complex traits. |
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Coen, Michael
Biostatistics and Medical Informatics |
Translational machine learning applied to medical datasets; applying machine learning to genomic analyses |
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Coon,
Joshua
Chemistry |
Development
and application of new technologies and
instrumentation for automated, large-scale
whole protein characterization |
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Craven,
Mark
Biostatistics and Medical Informatics
|
Machine
learning for bioinformatics and information
extraction; learning comphensive models. |
|
Culbertson,
Michael
Genetics |
Mechanisms of synthesis, decay, and function
of RNA using the yeast Saccharomyces cerevisiae as a model system. |
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de
Pablo, Juan
Chemical and Biological Engineering |
Investigating
thermophysical properties of fluids and
solids at a molecular level and using molecular-thermodynamic
models. |
|
Dewey,
Colin
Biostatistics
& Medical Informatics |
Algorithms
for problems in comparative genomics |
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Donohue,
Timothy
Bacteriology |
Studying
synthesis and activity of proteins that
function in critical energy generating pathways
in Rhodobacter sphaeroides. |
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Dove,
William
Oncology, Medical Genetics |
Mouse
development and neoplasia |
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Dyer,
Charles
Computer Sciences |
Developing
basic tools for controlling in real-time,
either autonomously or interactively, a
virtual camera of a real environment. |
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Fox, Catherine
Biomolecular Chemistry |
Genomic and computational analyses of chromsome replication in eukaryotes |
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Gasch,
Audrey
Genetics |
The genomics of yeast responses to environmental
stress and starvation. |
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Gould,
Michael
Oncology |
Molecular
genetics of mammary carcinogenesis and translation
research in the area of breast cancer prevention
and therapy. |
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Hittinger, Chris
Genetics |
Diversity and evolution of yeast carbon metabolism networks. |
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Hull,
Christina M.
Biomolecular Chemistry |
Molecular
biology of human fungal pathogens. |
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|
Kendziorski,
Christina
Biostatistics and Medical Informatics |
Development and application
of statistical methods for gene mapping
and gene expression array studies. |
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Kreeger, Pamela
Biomedical Engineering |
Systems biology, ovarian cancer, endocrine signaling |
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Krysan,
Patrick
Horticulture |
Signal transduction in Arabidopsis thaliana with a focus on MAP
kinase signaling pathways.
Functional genomics using A.
thaliana. |
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Loewe, Laurence
Genetics |
Evolutionary systems biology, evolutionary genetics, species extinction, antibiotics resistance evolution, population genetics, systems biology, simulation, parameter estimation, distributed computing |
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Markley,
John
Biochemistry |
NMR spectroscopy and its biological applications;
structure function relationships in proteins;
and stable-isotope assisted multinuclear
NMR. |
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Newton,
Michael
Biostatistics and Medical Informatics |
Developing statistical methods
to address problems with the comparison
ofexpression arrays. |
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Page,
C. David
Biostatistics and Medical Informatics
|
Data mining and machine learning,
with applications to bioinformatics,chemoinformatics,
and health sciences; inductive learning
programming. |
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Pagliarini, David
Biochemistry |
Investigation of the biochemical underpinnings of mitochondrial dysfunction in human diseases |
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Palecek,
Sean
Chemical and Biological Engineering |
Cellular
engineering, intracellular signal transduction,
cell and protein biosensors. |
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Palmenberg,
Ann
Biochemistry |
Molecular
biology of RNA picornaviruses, protein translation,
proteolytic processing, RNA synthesis,
viral pathogenesis and vaccines. |
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Payseur,
Bret
Genetics |
Population
genetic processes that determine patterns
and levels of variation throughout the genome,
including natural selection, recombination,
and mutations. |
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Perna,
Nicole
Genetics |
Genome scale comparative
analysis to identify the genetic elements
that distinguish one complete genome from
another. |
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Pfleger,
Brian
Chemical and Biological Engineering |
Synthetic
biology, metabolic engineering, biotechnology,
protein engineering, natural products. |
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Pool, John
Genetics |
New inference methods for population genomic sequence data; genetic basis of parallel melanic evolution in Drosophila. |
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Ramanathan, Parmesh
Electrical & Computer Engineering |
Characterization of the temporal dynamics of networks of gene interactions; longer-term goal, creation of a virtual foundry for genomic circuits. |
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Reed,
Jennifer
Chemical and Biological Engineering |
Systems biology, metabolic
model development and analysis, metabolic
engineering, biofuels, bioremediation, and
biotechnology. |
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Sushmita Roy
Biostatistics & Medical Informatics |
Inference of structure and function of regulatory networks; Comparative analysis of expression modules across species. |
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Schwartz,
David C.
GSTP Program Director
Chemistry / Genetics |
Chemistry
and biology of single molecule systems with
applications to genomic sciences. |
| |
| |
Shavlik,
Jude
Computer Sciences |
Machine
learning and datamining applied to biomedical
tasks such as microarray ("gene chip")
analysis and design, protein-structure
determination, and information extraction
from on-line biomedical text. |
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Shusta,
Eric
Chemical and Biological Engineering |
Development of an in vitro
model of the Blood Brain Barrier (BBB);analysis
of membrane proteome of the BBB. |
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Skop,
Ahna
Genetics |
Cytokinesis
and cell cycle proteomics. |
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Smith,
Lloyd
Chemistry |
Development
and application of novel methods and approaches
for the analysis and manipulation of biomolecules. |
|
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Sussman,
Michael
Biochemistry |
Signal transduction in eukaryotes,
development of genomic technologies, plasma
membrane receptors and ion transporters,
Arabidopsis thaliana. |
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Thomson,
James
Anatomy |
The
biology of pluripotency. Understanding
how human embryonic stem (ES) cells choose
between self-renewal, apoptosis, and differentiation
into specific lineages. |
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van
der Weide, Daniel
Electrical and Computer Engineering |
Multifunctional
scanned probe microscopy; localized spectroscopy
of biological and low-dimensional electronic
systems. |
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Wahba,
Grace
Statistics |
Development,
testing and application of new methods for
multivariate function estimation and statistical
model building. |
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Yandell,
Brian
Statistics |
Statistical genomics; theoretical statistics;
applications in selected areas of agriculture. |
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Yin,
John
Chemical and Biological Engineering |
Developing
experimental and theoretical approaches
to study growth, adaptation, and inactivation
of viruses. |
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